Publications

A resource-frugal probabilistic dictionary and applications in (meta)genomics.
Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo.
Prague Stringology Conference , Aug 2016, Prague, Czech Republic.

Multiple comparative metagenomics using multiset k-mer counting
Benoit, G., Peterlongo, P., Mariadassou, M., Drezen, E., Schbath, S., Lavenier, D., & Lemaitre, C. (2016).
PeerJ Computer Science, 2, e94. http://doi.org/10.7717/peerj-cs.94

KLAST: fast and sensitive software to compare large genomic databanks on cloud.
Petrov, I., Brillet, S., Drezen, E., Quiniou, S., Antin, L., Durand, P., & Lavenier, D. (2015).
In Proceedings of the International Conference on Bioinformatics & Computational Biology (BIOCOMP) (p. 85).

Simka: fast kmer-based method for estimating the similarity between numerous metagenomic datasets
Gaƫtan Benoit, Pierre Peterlongo, Dominique Lavenier, Claire Lemaitre
JOBIM 2015, Jul 2015, Clermont-Ferrand, France.