- Discovering Millions of Plankton Genomic Markers from the Atlantic Ocean and the Mediterranean Sea
Majda Arif, Jérémy Gauthier, Kevin Sugier, Daniele Iudicone, Olivier Jaillon, Patrick Wincker, Pierre Peterlongo, Mohammed-Amin Madoui
Molecular Ecology Resources, Wiley/Blackwell, 2018, pp.1-24. ⟨10.1111/1755-0998.12985⟩
A resource-frugal probabilistic dictionary and applications in bioinformaticsCamille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre PeterlongoDiscrete Applied Mathematics, Elsevier, 2018, pp.1-11. ⟨10.1016/j.dam.2018.03.035⟩
Simka: large-scale comparative metagenomics
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre
JOBIM 2017 , Jul 2017, Lille, France
Comparaison (massive) de (nombreux) metagénomes. Passons par les kmers pour passer à l’échelle.Claire Lemaitre – Invited speaker at Journée scientifique sur le Microbiome”, organized by Biogenouest, Rennes, France Dec. 2016.
Simka: fast kmer-based method for estimating the similarity between numerous metagenomic datasets
Gaëtan Benoit, Pierre Peterlongo, Dominique Lavenier, Claire Lemaitre
JOBIM 2015, Jul 2015, Clermont-Ferrand, France.
Best Poster Award
Multiple comparative metagenomics using multiset k-mer counting
Benoit, G., Peterlongo, P., Mariadassou, M., Drezen, E., Schbath, S., Lavenier, D., & Lemaitre, C. (2016).
PeerJ Computer Science, 2, e94. http://doi.org/10.7717/peerj-cs.94
KLAST: fast and sensitive software to compare large genomic databanks on cloud.
Petrov, I., Brillet, S., Drezen, E., Quiniou, S., Antin, L., Durand, P., & Lavenier, D. (2015).
In Proceedings of the International Conference on Bioinformatics & Computational Biology (BIOCOMP) (p. 85).
Simka: fast kmer-based method for estimating the similarity between numerous metagenomic datasets
Gaëtan Benoit, Pierre Peterlongo, Dominique Lavenier, Claire Lemaitre
JOBIM 2015, Jul 2015, Clermont-Ferrand, France.
